It turns out that the temperature issues with my G5 were not merely due to a little accumulated dust. The temperature sensor on CPU B has gone downhill to the point where it puts the machine to sleep after about 10 minutes from a cold boot, whether the machine is just idling or working hard, and then it's another couple of hours before its cool enough to boot again. The interesting thing to me is that this isn't an isolated issue, see, for example, this post and this thread. In fact, Apple changed the cooling design after my machine was shipped.
I had a "Genius" at the Apple Store and a local non-Apple repair shop take separate looks at the machine, and the diagnosis was the same — unknown root cause, but the standard course of action is to successively replace the logic board and one or both CPUs to see if that helps. (I didn't ask the "Genius" to show me his Mensa card...) The part shuffle isn't a surefire fix: it may help, but it may just cost money and not help at all. The person-to-person street value for an equivalently configured machine, via eBay, is about $1,800, which is barely more than the total cost of parts and labor if both the logic board and one CPU are needed. The machine is nice and heavy, so maybe it will make a good boat anchor...
For what it's worth, my experience at the Genius Bar was similar to Paul Boutin's. A twenty-something woman with various metal bits in her lips and nose asked me what the G5 was and if I did "computer stuff". I contemplated making up a story about how it was a really big iPod with a special headphone amplifier and personal subwoofer built-in, but I just replied "yes" and left it at that. The local repair shop provided more information but took two weeks to do it. Maybe people who use their Apple products to make money instead of spend it are no longer the company's core market? His house is a lot bigger than mine, so I can hardly fault Real Steve Jobs for his choices.
Today, I spent nearly two hours on the phone with Apple support, working my way through offshore call centers to someone with actual knowledge of the machine, but the response was a resounding "You should have bought AppleCare." I have a hard time trusting someone who can look me in the eye and tell me that I need to put money down on a bet that their product will fail, but that's the official line.
Assaf put his Twitter finger on one of my thoughts: maybe Apple is not the answer.
And maybe it is time to give Linux another shot as a primary operating system. The company that I bought reliable workstations from back when I was an academic is still in business... Apple is far from perfect, but up to now, they have been better enough to win my business. Like other people, I have had issues with Apple operating system updates on my laptops (SuperDuper is well worth the money!), and I've had to install from scratch at least a half-dozen times in the past five years. In fact, I've developed a ritual for migrating my settings and additional binaries (primarily MacPorts) to a new install. Nonetheless, it would be hard to leave the Mac behind. I use and love OmniGraffle, Keynote, VoodooPad, QuickSilver, TaskPaper, and a host of other Mac-only software, including more spendy stuff like Reaktor.
If the guts are sufficiently generic, I'll give the forthcoming Penryn machines a chance, and if not, I'll take my money elsewhere.